#How to use blast from command-line, on Mac OS X.
Install blast
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Download executables (binary) of blast-commands for Mac OS X.
Install via ncbi-blast-2.2.28+.dmg
Then, you can use folowing commands,
Next, download fasta-file to create database for blast.In this example, we use Swissprot.
Then, create databese for blast form this fasta-file.
Use blast from command-line
In this example, we will use blastp
. blastp
is for,
query: protein, database: protein.
Use like following,
Notice:For option -db, you have to write /path/to/db/,e.g.,
Otherwise (setting just path to db directory /path/to/db/), you will get foloowing error.
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Size: 10.2 KB
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Size: 1.8 MB
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Size: 5.6 MB
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Size: 921.6 KB
License: Shareware
Blast keeps track of the files you've been using on your computer and gives you super easy and lightning fast access to them.
Category: Utilities / File & Disk Management
Date: 04 August, 2013
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Size: 8.3 MB
License: Shareware
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Size: 37.8 MB
License: Shareware
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Size: 12.8 MB
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Size: 3.5 MB
License: Freeware
Category: Utilities / Other
Date: 31 October, 2013
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Size: 0
License: Shareware
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Size: 757.8 KB
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Size: 737.3 KB
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Size: 16.9 MB
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Date: 05 January, 2014
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Category: Network & Internet / Networking
Date: 03 November, 2013
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Size: 8.2 MB
License: Shareware
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Date: 21 December, 2013
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